No trains are running between 34th Street-Penn Station and South Ferry/Atlantic Avenue-Barclays Center.
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The 1 train runs from 242 Street in the Bronx to Penn Station.
The 2 train runs on the 5 line from Dyre Avenue and E. 180th Street in the Bronx to Penn Station. The 5 train runs between Flatbush Avenue and Brooklyn, and runs on the 2 line to and from 241 Street.
All 3 train service is suspended. Free shuttle buses are running in Manhattan to and from the 148 Street, 145 Street and 135th Street stops. In Brooklyn, 4 trains make all 3 stop from Atlantic Avenue-Barclays Center to New Lots Avenue.
More information and travel alternatives are available at mta.info.